Documentation
MARGA
MARGA has been developed using the Insight ToolKit. It can be compiled using the cmakelist.txt file included and executed using the provided script.
Basically in the case you need to compile the code, call ccmake . in the directory where the code is and just set the ITK dir variable to its correct value (details for this can be found in ITK's installation guide under "using ITK from an external project"). Also, call make and make install in order to compile, link, and install the code.
External codes
The codes in this section are provided by its respective authors and all we do here is provide some pointers to make it easier to access it. The links to the dowload webpages are found in "useful resources".
BET is the Brain Extraction Tool provided by the FSL library. FSL is a stand-alone software including a comprehensive library of tools for analysing FMRI, MRI, and DTI brain imaging data, which can be run both from the command line and as GUIs. FSL has a script installer that do all the installation job.
The Brain Segmentation Extraction is provided by the BrainSuite repository. BrainSuite is also a stand-alone software including a collection of tools that enable automated processing of magnetic resonance images (MRI) of the human brain.
SPM is a Matlab-based software package that provides a lot of utilities for neuroimaging analysis. SPM provides a good documentation of its algorithms and also it has a very active dicussion list where it is possible to get very good support.
